3D CELL ANNOTATOR
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Download MITK including 3D-Cell-Annotator:
(MITK version 2018.04.2)


SOFTWARE:

Releases (Windows and Linux)

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Build from source

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SAMPLE DATASETS:

Dataset "A": 3D embryo with 56 cells, confocal

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Picture

Dataset "B": 3D spheroid with 52 cells, light-sheet

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Picture

Dataset "C": 77 single-cell z-stacks, confocal

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Picture

SUPPLEMENTARY MATERIAL (SP):

SP0: 3D masks of the single cells of the Sample Datasets

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SP1: MatLab code to compute the 3D Jaccard Index

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SP2: 3D masks obtained with other tools

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LICENSE (MITK):


MITK source code and the material available on the MITK website is licensed under the: 3-clause BSD License
The exact MITK license text is reported at: http://mitk.org/wiki/License
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LICENCE (3D-Cell-Annotator):


Copyright (©) 2019, Peter Horvath. All rights reserved.
3D-Cell-Annotator source code and the material available on the 3D-Cell-Annotator website is licensed under the:

3-clause BSD License
The exact 3D-Cell-Annotator license text is:
 
Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
 
  • Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
  • Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
  • Neither the name of the Hungarian Academy of Sciences nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission.
 
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL <COPYRIGHT HOLDER> BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.



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Hungarian Academia of Sciences
Biological Research Centre,
Szeged, Hungary

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Institute for Molecular Medicine Finland
University of Helsinki,
Helsinki, Finland

Copyright (©) 2019 Peter Horvath. All rights reserved.
Website created by Máté Görbe

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